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Our findings show that the T. monococcum var. boeoticum genome is genetically distinct from the wheat D genome, the rye SR1 genome and the hexaploid bread wheat genome (Supplementary Fig. 1), representing a lineage of Hordeum that was domesticated in the Fertile Crescent. This Hordeum lineage was subsequently dispersed to west Asia and northwest Europe, where it became the common wheat genome. The T. monococcum var. boeoticum genome diverged from the common wheat genome approximately 2.4–4.0 million years ago (Supplementary Fig. 2), whereas the L2 and L3 wheat genomes diverged more recently, approximately 1.0 million years ago. The origins of the diploid and tetraploid wheat genomes are thought to have occurred independently, with one lineage evolving into L1 and the other into L3. The L1/L3 genomes of both wheat species contribute to allopolyploid hexaploid wheat. It is important to note that the modern hexaploid wheat genome is a mosaic of these two allopolyploid genomes.
Our analysis revealed that the D subgenome consists of four distinct lineages (Fig. 1d), with L2 contributing the majority of the genetic variation in the D subgenome (Fig. 2b). A subset of the diversity within L2 can be explained by shared ancestry with L3. However, due to the greater average genetic diversity of L2, we hypothesized that the D subgenome may have a much greater contribution of L3 to its genetic variation than L2. To test this hypothesis, we compared the contribution of L2 and L3 to the D subgenome among 12 local populations from the Caspian and North Caucasus regions. The frequency of L2 and L3 detected in each population was consistent with the inferred ancestry, suggesting that L3 was the dominant contributor to the D subgenome in most of these populations (Supplementary Fig. 1). We calculated the contribution of L2 and L3 to the D subgenome and found that it varied significantly (Fig. 2d). L2 contributed a larger proportion of the D subgenome in the more recently colonized populations from Caspian (Khoda et al.
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One of the drawbacks to this approach was that we needed to recompile every time we made even a small change to the code. This slowed everything else we were doing down and because we couldn't always have someone waiting for the application to finish building. 827ec27edc